dxtbx.serialize¶
dxtbx.serialize.load¶
- dxtbx.serialize.load.crystal(infile)¶
Load the given JSON file.
- Params:
infile The input filename or file object
- Returns:
The models
- dxtbx.serialize.load.experiment_list(infile, check_format=True)¶
Load an experiment list from a serialized format.
- dxtbx.serialize.load.imageset(filename)¶
Load the given JSON file.
- Params:
infile The input filename
- Returns:
The models
dxtbx.serialize.dump¶
dxtbx.serialize.xds¶
- dxtbx.serialize.xds.to_crystal(filename)¶
Get the crystal model from the xparm file
- Params:
filename The xparm/or integrate filename
- Returns:
The crystal model
- dxtbx.serialize.xds.to_imageset(input_filename, extra_filename=None)¶
Get an image set from the xds input filename plus an extra filename
- Params:
input_filename The XDS.INP file extra_filename A (G)XPARM.XDS, INTGRATE.HKL or XDS_ASCII.HKL file
- Returns:
The imageset
- class dxtbx.serialize.xds.to_xds(sequence)¶
Bases:
objectA class to export contents of a Sequence as XDS.INP or XPARM.XDS.
- XDS_INP(space_group_number=None, real_space_a=None, real_space_b=None, real_space_c=None, job_card='XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT')¶
- get_beam()¶
- get_detector()¶
- get_goniometer()¶
- get_scan()¶
- get_template()¶
- xparm_xds(real_space_a, real_space_b, real_space_c, space_group)¶
- dxtbx.serialize.xds.xds_detector_name(dxtbx_name)¶
Translate from a xia2 name from the detector library to an XDS detector name.