Python Module Index

c | d | i | l | m | s | x
 
c
cctbx
    cctbx.adp_restraints
    cctbx.adp_restraints.energies
    cctbx.adp_restraints.flags
    cctbx.adptbx
    cctbx.array_family
    cctbx.array_family.flex
    cctbx.command_line
    cctbx.command_line.brehm_diederichs
    cctbx.command_line.cod_select_and_pickle
    cctbx.command_line.euclidean_model_matching
    cctbx.command_line.find_reticular_twin_laws
    cctbx.command_line.form_factor_query
    cctbx.command_line.precession_view
    cctbx.command_line.space_group_info
    cctbx.command_line.structure_factor_timings
    cctbx.command_line.subgroups
    cctbx.command_line.version
    cctbx.command_line.wavelength_units
    cctbx.covariance
    cctbx.crystal
    cctbx.crystal.burzlaff_zimmermann_dewolff
    cctbx.crystal.close_packing
    cctbx.crystal.coordination_sequences
    cctbx.crystal.direct_space_asu
    cctbx.crystal.distance_based_connectivity
    cctbx.crystal.find_best_cell
    cctbx.crystal.reindex
    cctbx.crystal_orientation
    cctbx.development
    cctbx.development.cns_density_modification
    cctbx.development.debug_utils
    cctbx.development.direct_or_fft
    cctbx.development.electron_density_sampling
    cctbx.development.fmt_utils
    cctbx.development.make_cns_input
    cctbx.development.make_settings
    cctbx.development.random_structure
    cctbx.development.run_shelx
    cctbx.development.run_shelx76
    cctbx.development.space_group_option_parser
    cctbx.development.structure_factor_utils
    cctbx.dmtbx
    cctbx.eltbx
    cctbx.eltbx.attenuation_coefficient
    cctbx.eltbx.chemical_elements
    cctbx.eltbx.covalent_radii
    cctbx.eltbx.development
    cctbx.eltbx.development.combine_fits
    cctbx.eltbx.development.create_n_gaussian_raw_cpp
    cctbx.eltbx.development.e_scattering_plots
    cctbx.eltbx.development.format_gaussian_fits
    cctbx.eltbx.development.hydrogen_plots
    cctbx.eltbx.development.itvc_approx
    cctbx.eltbx.development.itvc_cross_validation
    cctbx.eltbx.development.itvc_fits
    cctbx.eltbx.development.itvc_kissel
    cctbx.eltbx.development.itvc_section61_io
    cctbx.eltbx.development.kissel_fits
    cctbx.eltbx.development.kissel_io
    cctbx.eltbx.development.rez_rez_grant
    cctbx.eltbx.distance_based_connectivity
    cctbx.eltbx.e_scattering
    cctbx.eltbx.formula
    cctbx.eltbx.fp_fdp
    cctbx.eltbx.gaussian_fit
    cctbx.eltbx.henke
    cctbx.eltbx.icsd_radii
    cctbx.eltbx.neutron
    cctbx.eltbx.sasaki
    cctbx.eltbx.tiny_pse
    cctbx.eltbx.van_der_waals_radii
    cctbx.eltbx.wavelengths
    cctbx.eltbx.xray_scattering
    cctbx.euclidean_model_matching
    cctbx.examples
    cctbx.examples.adp_symmetry_constraints
    cctbx.examples.all_axes
    cctbx.examples.analyze_adp
    cctbx.examples.change_hand_p31
    cctbx.examples.convert_ccp4_symop_lib
    cctbx.examples.cr2o3_consistency_checks
    cctbx.examples.cr2o3_primitive_cell
    cctbx.examples.exp_i_alpha_derivatives
    cctbx.examples.f_model_example
    cctbx.examples.fft_map_electron_density_around_atom
    cctbx.examples.find_distances_using_cpp_objects
    cctbx.examples.find_sys_abs_equiv_space_groups
    cctbx.examples.g_exp_i_alpha_derivatives
    cctbx.examples.g_exp_i_partial_derivatives
    cctbx.examples.getting_started
    cctbx.examples.hirshfeld_test
    cctbx.examples.le_page_1982_vs_lebedev_2005
    cctbx.examples.lebedev_2005_perturbation
    cctbx.examples.list_non_principal_continuous_shifts
    cctbx.examples.location_part
    cctbx.examples.map_skewness
    cctbx.examples.maximum_subgroups
    cctbx.examples.miller_common_sets
    cctbx.examples.miller_transform
    cctbx.examples.neutron_structure_factors
    cctbx.examples.phase_o_phrenia
    cctbx.examples.quartz_structure
    cctbx.examples.random_f_calc
    cctbx.examples.random_puckers
    cctbx.examples.reduced_cell_two_folds
    cctbx.examples.site_symmetry_constraints
    cctbx.examples.site_symmetry_table
    cctbx.examples.space_group_matrices
    cctbx.examples.space_subgroups
    cctbx.examples.steve_collins
    cctbx.examples.structure_factor_calculus
    cctbx.examples.structure_factor_calculus.site_derivatives
    cctbx.examples.structure_factor_calculus.sites_derivatives
    cctbx.examples.structure_factor_calculus.sites_least_squares_derivatives
    cctbx.examples.structure_factor_calculus.u_star_derivatives
    cctbx.examples.structure_factor_derivatives
    cctbx.examples.structure_factor_derivatives_2
    cctbx.examples.structure_factor_derivatives_3
    cctbx.examples.structure_factor_derivatives_4
    cctbx.examples.sub_group_graph
    cctbx.examples.symops_530
    cctbx.examples.trigonal_r_vs_tetragonal_i
    cctbx.examples.unit_cell_minimizers
    cctbx.examples.unit_cell_refinement
    cctbx.french_wilson
    cctbx.geometry
    cctbx.geometry_restraints
    cctbx.geometry_restraints.energies
    cctbx.geometry_restraints.flags
    cctbx.geometry_restraints.lbfgs
    cctbx.geometry_restraints.manager
    cctbx.macro_mol
    cctbx.macro_mol.rotation_parameters
    cctbx.maptbx
    cctbx.maptbx.mem
    cctbx.maptbx.real_space_refinement_simple
    cctbx.masks
    cctbx.math_module
    cctbx.merging
    cctbx.merging.brehm_diederichs
    cctbx.miller
    cctbx.miller.display
    cctbx.miller.reindexing
    cctbx.multipolar
    cctbx.neutron
    cctbx.omz
    cctbx.omz.bfgs
    cctbx.omz.cif_refine
    cctbx.omz.cod_refine
    cctbx.omz.cod_select_and_pickle
    cctbx.omz.dev
    cctbx.omz.eval_iso_vs_refined
    cctbx.omz.pdb_dev
    cctbx.omz.tardy_adaptor
    cctbx.r_free_utils
    cctbx.run_examples
    cctbx.run_tests
    cctbx.sgtbx
    cctbx.sgtbx.bravais_types
    cctbx.sgtbx.cosets
    cctbx.sgtbx.direct_space_asu
    cctbx.sgtbx.direct_space_asu.check_redundancies
    cctbx.sgtbx.direct_space_asu.cut_plane
    cctbx.sgtbx.direct_space_asu.facet_analysis
    cctbx.sgtbx.direct_space_asu.plane_group_reference_table
    cctbx.sgtbx.direct_space_asu.proto
    cctbx.sgtbx.direct_space_asu.proto.generate_cpp_asu_table
    cctbx.sgtbx.direct_space_asu.reference_table
    cctbx.sgtbx.direct_space_asu.short_cuts
    cctbx.sgtbx.harker
    cctbx.sgtbx.lattice_symmetry
    cctbx.sgtbx.literal_description
    cctbx.sgtbx.plane_groups
    cctbx.sgtbx.pointgroup_tools
    cctbx.sgtbx.rational_matrices_point_groups
    cctbx.sgtbx.reticular_pg_tools
    cctbx.sgtbx.reticular_twin_laws
    cctbx.sgtbx.show_cosets
    cctbx.sgtbx.sub_lattice_tools
    cctbx.sgtbx.subgroups
    cctbx.sgtbx.symbol_confidence
    cctbx.sgtbx.sys_abs_equiv
    cctbx.source_generators
    cctbx.source_generators.eltbx
    cctbx.source_generators.eltbx.generate_henke_cpp
    cctbx.source_generators.eltbx.generate_sasaki_cpp
    cctbx.source_generators.flex_fwd_h
    cctbx.statistics
    cctbx.symmetry_search
    cctbx.translation_search
    cctbx.uctbx.determine_unit_cell
    cctbx.uctbx.gruber_1973
    cctbx.uctbx.gruber_1973_table_1
    cctbx.uctbx.krivy_gruber_1976
    cctbx.uctbx.reduction_base
    cctbx.web
    cctbx.web.all_axes
    cctbx.web.asu_gallery
    cctbx.web.asu_gallery.guide_to_notation
    cctbx.web.asu_gallery.jv_asu
    cctbx.web.asu_gallery.jv_index
    cctbx.web.asu_gallery.jvx
    cctbx.web.asu_gallery.web_links
    cctbx.web.browse_settings
    cctbx.web.cgi_utils
    cctbx.web.change_basis
    cctbx.web.change_hand
    cctbx.web.change_setting
    cctbx.web.dispatcher
    cctbx.web.emma
    cctbx.web.explore_symmetry
    cctbx.web.frac_cart
    cctbx.web.io_utils
    cctbx.web.iotbx_cif_validate
    cctbx.web.lattice_symmetry
    cctbx.web.libtbx_help
    cctbx.web.multiple_cell
    cctbx.web.phase_o_phrenia
    cctbx.web.replay
    cctbx.web.shelx
    cctbx.web.structure_factors
    cctbx.web.structure_factors_pdb
    cctbx.web.wyckoff
    cctbx.xray
    cctbx.xray.ext
    cctbx.xray.minimization
    cctbx.xray.observation_types
    cctbx.xray.observations
    cctbx.xray.scatterer
    cctbx.xray.structure
    cctbx.xray.structure_factors
    cctbx.xray.structure_factors.from_scatterers
    cctbx.xray.structure_factors.from_scatterers_direct
    cctbx.xray.structure_factors.from_scatterers_direct_parallel
    cctbx.xray.structure_factors.from_scatterers_fft
    cctbx.xray.structure_factors.global_counters
    cctbx.xray.structure_factors.gradient_flags
    cctbx.xray.structure_factors.gradients
    cctbx.xray.structure_factors.gradients_base
    cctbx.xray.structure_factors.gradients_direct
    cctbx.xray.structure_factors.gradients_fft
    cctbx.xray.structure_factors.manager
    cctbx.xray.structure_factors.misc
    cctbx.xray.target_functors
    cctbx.xray.targets
    cctbx.xray.targets.r1
    cctbx.xray.weighting_schemes
 
d
dxtbx
    dxtbx.model.beam
    dxtbx.model.crystal
    dxtbx.model.detector
    dxtbx.model.goniometer
    dxtbx.model.scan
    dxtbx.serialize.dump
    dxtbx.serialize.load
    dxtbx.serialize.xds
 
i
iotbx
    iotbx.file_reader
    iotbx.reflection_file_reader
    iotbx.shelx
    iotbx.shelx.crystal_symmetry_from_ins
    iotbx.shelx.hklf
    iotbx.shelx.lexer
    iotbx.shelx.parsers
    iotbx.shelx.tokens
    iotbx.shelx.write_ins
    iotbx.shelx.writer
    iotbx.xds.integrate_hkl
    iotbx.xds.read_ascii
    iotbx.xds.spot_xds
    iotbx.xds.xds_inp
    iotbx.xds.xparm
 
l
libtbx
    libtbx.phil.command_line
 
m
mmtbx
    mmtbx.building
    mmtbx.building.alternate_conformations
    mmtbx.building.alternate_conformations.altloc_labeling
    mmtbx.building.alternate_conformations.single_residue
    mmtbx.building.extend_sidechains
    mmtbx.building.make_library
    mmtbx.bulk_solvent
    mmtbx.bulk_solvent.bulk_solvent_and_scaling
    mmtbx.bulk_solvent.scaler
    mmtbx.cablam
    mmtbx.cablam.cablam_align
    mmtbx.cablam.cablam_fingerprints
    mmtbx.cablam.cablam_math
    mmtbx.cablam.cablam_res
    mmtbx.cablam.cablam_training
    mmtbx.cablam.cablam_validate
    mmtbx.cablam.fingerprints
    mmtbx.cablam.fingerprints.antiparallel_beta
    mmtbx.cablam.fingerprints.antiparallel_beta_bridge
    mmtbx.cablam.fingerprints.how_to
    mmtbx.cablam.fingerprints.parallel_beta
    mmtbx.cablam.fingerprints.regular_helix_definitions
    mmtbx.chemical_components
    mmtbx.chemical_components.cif_parser
    mmtbx.command_line
    mmtbx.conformation_dependent_library
    mmtbx.conformation_dependent_library.altloc_weighting
    mmtbx.conformation_dependent_library.bond_angle_registry
    mmtbx.conformation_dependent_library.cdl_database
    mmtbx.conformation_dependent_library.rdl_database
    mmtbx.conformation_dependent_library.test_cdl
    mmtbx.conformation_dependent_library.utils
    mmtbx.den
    mmtbx.den.plot_weights
    mmtbx.den.refinement
    mmtbx.density_modification
    mmtbx.disorder
    mmtbx.disorder.analyze_model
    mmtbx.disorder.backbone
    mmtbx.dynamics
    mmtbx.dynamics.cartesian_dynamics
    mmtbx.dynamics.constants
    mmtbx.dynamics.ensemble_cd
    mmtbx.dynamics.simulated_annealing
    mmtbx.f_model
    mmtbx.f_model_info
    mmtbx.geometry
    mmtbx.geometry.altloc
    mmtbx.geometry.asa
    mmtbx.geometry.clash
    mmtbx.geometry.indexing
    mmtbx.geometry.shared_types
    mmtbx.geometry.sphere_surface_sampling
    mmtbx.geometry.topology
    mmtbx.geometry_restraints
    mmtbx.geometry_restraints.c_beta
    mmtbx.geometry_restraints.external
    mmtbx.geometry_restraints.ramachandran
    mmtbx.geometry_restraints.reference
    mmtbx.hydrogens
    mmtbx.hydrogens.build_hydrogens
    mmtbx.hydrogens.find
    mmtbx.ias
    mmtbx.ions
    mmtbx.ions.build
    mmtbx.ions.environment
    mmtbx.ions.geometry
    mmtbx.ions.halides
    mmtbx.ions.identify
    mmtbx.ions.svm
    mmtbx.ions.svm.dump_sites
    mmtbx.ions.svm.utils
    mmtbx.ions.utils
    mmtbx.kinemage
    mmtbx.kinemage.validation
    mmtbx.ligands
    mmtbx.ligands.xtal_screens
    mmtbx.maps
    mmtbx.maps.composite_omit_map
    mmtbx.maps.fem
    mmtbx.maps.fobs_minus_fobs_map
    mmtbx.maps.kick
    mmtbx.maps.superpose
    mmtbx.maps.utils
    mmtbx.masks
    mmtbx.max_lik
    mmtbx.max_lik.max_like_non_uniform
    mmtbx.max_lik.maxlik
    mmtbx.monomer_library
    mmtbx.monomer_library.bondlength_defaults
    mmtbx.monomer_library.cif_triage
    mmtbx.monomer_library.cif_types
    mmtbx.monomer_library.conformation_dependent_restraints
    mmtbx.monomer_library.conv_v2_v3
    mmtbx.monomer_library.correct_hydrogen_geometries
    mmtbx.monomer_library.glyco_chiral_values
    mmtbx.monomer_library.glyco_utils
    mmtbx.monomer_library.hydrogen_restrictions
    mmtbx.monomer_library.idealized_aa
    mmtbx.monomer_library.linking_mixins
    mmtbx.monomer_library.linking_setup
    mmtbx.monomer_library.linking_utils
    mmtbx.monomer_library.pdb_interpretation
    mmtbx.monomer_library.rna_sugar_pucker_analysis
    mmtbx.monomer_library.rotamer_utils
    mmtbx.monomer_library.server
    mmtbx.ncs
    mmtbx.ncs.ligands
    mmtbx.ncs.ncs
    mmtbx.ncs.ncs_search
    mmtbx.ncs.ncs_utils
    mmtbx.polygon
    mmtbx.polygon.output
    mmtbx.real_space
    mmtbx.refinement
    mmtbx.refinement.adp_refinement
    mmtbx.refinement.anomalous_scatterer_groups
    mmtbx.refinement.ensemble_refinement
    mmtbx.refinement.ensemble_refinement.ensemble_utils
    mmtbx.refinement.geometry_minimization
    mmtbx.refinement.group
    mmtbx.refinement.inspect_tardy_trajectory
    mmtbx.refinement.minimization
    mmtbx.refinement.minimization_ncs_constraints
    mmtbx.refinement.occupancies
    mmtbx.refinement.orca
    mmtbx.refinement.print_statistics
    mmtbx.refinement.real_space
    mmtbx.refinement.real_space.fit_residue
    mmtbx.refinement.real_space.fit_residues
    mmtbx.refinement.real_space.fit_water
    mmtbx.refinement.real_space.individual_sites
    mmtbx.refinement.real_space.rigid_body
    mmtbx.refinement.real_space.weight
    mmtbx.refinement.refinement_flags
    mmtbx.refinement.rigid_body
    mmtbx.refinement.select_best_starting_model
    mmtbx.refinement.tardy
    mmtbx.refinement.targets
    mmtbx.refinement.weights_params
    mmtbx.refinement.wx_tardy_pdb
    mmtbx.rotamer
    mmtbx.rotamer.graphics
    mmtbx.rotamer.n_dim_table
    mmtbx.rotamer.ramachandran_eval
    mmtbx.rotamer.rotamer_eval
    mmtbx.rotamer.sidechain_angles
    mmtbx.rsr
    mmtbx.scaling
    mmtbx.scaling.absence_likelihood
    mmtbx.scaling.absences
    mmtbx.scaling.absolute_scaling
    mmtbx.scaling.basic_analyses
    mmtbx.scaling.data_statistics
    mmtbx.scaling.fa_estimation
    mmtbx.scaling.fest
    mmtbx.scaling.make_param
    mmtbx.scaling.massage_twin_detwin_data
    mmtbx.scaling.matthews
    mmtbx.scaling.outlier_plots
    mmtbx.scaling.outlier_rejection
    mmtbx.scaling.pair_analyses
    mmtbx.scaling.pre_scale
    mmtbx.scaling.random_omit
    mmtbx.scaling.relative_scaling
    mmtbx.scaling.relative_wilson
    mmtbx.scaling.remove_outliers
    mmtbx.scaling.rip_scale
    mmtbx.scaling.sad_scale
    mmtbx.scaling.sigmaa_estimation
    mmtbx.scaling.sir_scale
    mmtbx.scaling.siras_scale
    mmtbx.scaling.ta_alpha_beta_calc
    mmtbx.scaling.thorough_outlier_test
    mmtbx.scaling.twin_analyses
    mmtbx.scaling.twmad_scale
    mmtbx.scaling.xtriage
    mmtbx.secondary_structure
    mmtbx.secondary_structure.build
    mmtbx.secondary_structure.dssp
    mmtbx.secondary_structure.proteins
    mmtbx.secondary_structure.utils
    mmtbx.solvent
    mmtbx.solvent.ensemble_ordered_solvent
    mmtbx.solvent.ordered_solvent
    mmtbx.tls
    mmtbx.tls.command_line
    mmtbx.tls.ladp
    mmtbx.tls.tls_as_xyz
    mmtbx.tls.tools
    mmtbx.twinning
    mmtbx.twinning.probabalistic_detwinning
    mmtbx.twinning.twin_f_model
    mmtbx.twinning.twin_map_utils
    mmtbx.utils
    mmtbx.utils.fab_elbow_angle
    mmtbx.utils.rotatable_bonds
    mmtbx.validation
    mmtbx.validation.analyze_peptides
    mmtbx.validation.cbetadev
    mmtbx.validation.clashscore
    mmtbx.validation.experimental
    mmtbx.validation.graphics
    mmtbx.validation.ligands
    mmtbx.validation.model_properties
    mmtbx.validation.molprobity
    mmtbx.validation.molprobity.mp_geo
    mmtbx.validation.molprobity.nqh_minimize
    mmtbx.validation.ramalyze
    mmtbx.validation.restraints
    mmtbx.validation.rna_validate
    mmtbx.validation.rotalyze
    mmtbx.validation.sequence
    mmtbx.validation.utils
    mmtbx.validation.waters
    mmtbx.wwpdb
    mmtbx.wwpdb.rcsb_web_services
    mmtbx.wwpdb.standard_geometry_cif
    mmtbx.wwpdb.utils
 
s
scitbx
    scitbx.array_family.flex
    scitbx.lbfgs
    scitbx.lstbx.normal_eqns
    scitbx.lstbx.normal_eqns_solving
    scitbx.matrix
 
x
xfel
    xfel.cftbx
    xfel.cftbx.detector
    xfel.cftbx.detector.cspad_cbf_tbx
    xfel.cftbx.detector.cspad_detector
    xfel.cftbx.detector.generic_detector
    xfel.cftbx.detector.metrology
    xfel.cftbx.detector.metrology2phil
    xfel.clustering.cluster
    xfel.clustering.cluster_groups
    xfel.clustering.singleframe
    xfel.command_line
    xfel.command_line.brehm_diederichs
    xfel.command_line.cbf_average
    xfel.command_line.convert_gain_map
    xfel.command_line.convert_gain_map_cbf
    xfel.command_line.cxi_apply_metrology
    xfel.command_line.cxi_cspad_pinwheel
    xfel.command_line.cxi_diff
    xfel.command_line.cxi_display_metrology
    xfel.command_line.cxi_generate_circular_gain_mask
    xfel.command_line.cxi_index
    xfel.command_line.cxi_lsf
    xfel.command_line.cxi_merge
    xfel.command_line.cxi_optical2cbfheader
    xfel.command_line.cxi_pbs
    xfel.command_line.cxi_pickle2cbf
    xfel.command_line.cxi_plotcv
    xfel.command_line.cxi_psana
    xfel.command_line.cxi_pyana
    xfel.command_line.cxi_spots
    xfel.command_line.cxi_stream_to_pickle
    xfel.command_line.cxi_view
    xfel.command_line.cxi_xmerge
    xfel.command_line.histogram_finalise
    xfel.command_line.list_db_metadata
    xfel.command_line.make_mask
    xfel.command_line.monitor_detectors
    xfel.command_line.monitor_trials
    xfel.command_line.overlay_spectra
    xfel.command_line.plot_to_subpixel
    xfel.command_line.postrefine
    xfel.command_line.print_pickle
    xfel.command_line.quadrants
    xfel.command_line.radial_average
    xfel.command_line.smooth_spectrum
    xfel.command_line.subtract_background
    xfel.command_line.trial_stats
    xfel.command_line.view_pixel_histograms
    xfel.command_line.xes_finalise
    xfel.command_line.xes_histograms
    xfel.cxi
    xfel.cxi.average_spots
    xfel.cxi.correction_vector_plot
    xfel.cxi.cspad_ana
    xfel.cxi.cspad_ana.average_tbx
    xfel.cxi.cspad_ana.common_mode
    xfel.cxi.cspad_ana.cspad_tbx
    xfel.cxi.cspad_ana.display_calib
    xfel.cxi.cspad_ana.histogram_finalise
    xfel.cxi.cspad_ana.hitfinder_tbx
    xfel.cxi.cspad_ana.mod_average
    xfel.cxi.cspad_ana.mod_daq_status
    xfel.cxi.cspad_ana.mod_dump
    xfel.cxi.cspad_ana.mod_dump_bitmap
    xfel.cxi.cspad_ana.mod_event_info
    xfel.cxi.cspad_ana.mod_filter
    xfel.cxi.cspad_ana.mod_hdf5
    xfel.cxi.cspad_ana.mod_hitfind
    xfel.cxi.cspad_ana.mod_illumination_filter
    xfel.cxi.cspad_ana.mod_mar
    xfel.cxi.cspad_ana.mod_param
    xfel.cxi.cspad_ana.mod_pulnix_dump
    xfel.cxi.cspad_ana.mod_radial_average
    xfel.cxi.cspad_ana.mod_view
    xfel.cxi.cspad_ana.mod_xes
    xfel.cxi.cspad_ana.parse_calib
    xfel.cxi.cspad_ana.pixel_histograms
    xfel.cxi.cspad_ana.xes_finalise
    xfel.cxi.cspad_ana.xes_histograms
    xfel.cxi.cxi_cc
    xfel.cxi.display_powder_arcs
    xfel.cxi.display_spots
    xfel.cxi.gfx
    xfel.cxi.gfx.status_plot
    xfel.cxi.gfx.trials_plot
    xfel.cxi.gfx.wx_detectors
    xfel.cxi.integrate_image_api
    xfel.cxi.strong_zulu
    xfel.cxi.util
    xfel.metrology
    xfel.metrology.flatfile
    xfel.metrology.legacy_scale
    xfel.metrology.mark0
    xfel.metrology.mark1
    xfel.metrology.mark3
    xfel.metrology.quadrant
    xfel.mono_simulation
    xfel.mono_simulation.max_like
    xfel.mono_simulation.mono_treatment
    xfel.phil_preferences