mmtbx.density_modification package¶
Module contents¶
- class mmtbx.density_modification.density_modification(params, f_obs, hl_coeffs_start, ncs_object=None, map_coeffs=None, log=None, as_gui_program=False)¶
Bases:
object- property active_indices¶
- anisotropic_correction()¶
- calculate_solvent_mask()¶
- compute_map()¶
- compute_map_coefficients()¶
- compute_phase_source(hl_coeffs, n_steps=72)¶
- property d_min¶
- density_truncation()¶
- property f_obs_active¶
- get_stats()¶
- property hl_coeffs_in_original_setting¶
- property map_coeffs_in_original_setting¶
- matthews_analysis()¶
- miller_array_in_original_setting(miller_array)¶
- ncs_averaging()¶
- next_cycle()¶
- property radius¶
- show_cycle_summary(out=None)¶
- solvent_adjust()¶
- solvent_flattening()¶
- solvent_flipping()¶
- start_and_end_fom()¶
- class mmtbx.density_modification.dm_stats¶
Bases:
object- add_cycle(**kwds)¶
- extract_loggraph()¶
- format_summary(i_cycle=-1)¶
- get_cycle_stats(i_cycle=-1)¶
- get_fom_for_plot()¶
- class mmtbx.density_modification.local_standard_deviation_map(map_coeffs, radius, mean_solvent_density=0, method=0, symmetry_flags=None, resolution_factor=0.3333333333333333)¶
Bases:
object- histogram(n_slots=10000)¶
- mask(solvent_fraction)¶
- mmtbx.density_modification.rms(flex_double)¶